Can I please get some help on how to calculate the BRS Scores. I am currently using excel but i could also get it done i

Business, Finance, Economics, Accounting, Operations Management, Computer Science, Electrical Engineering, Mechanical Engineering, Civil Engineering, Chemical Engineering, Algebra, Precalculus, Statistics and Probabilty, Advanced Math, Physics, Chemistry, Biology, Nursing, Psychology, Certifications, Tests, Prep, and more.
Post Reply
answerhappygod
Site Admin
Posts: 899603
Joined: Mon Aug 02, 2021 8:13 am

Can I please get some help on how to calculate the BRS Scores. I am currently using excel but i could also get it done i

Post by answerhappygod »

Can I please get some help on how to calculate the BRS Scores. Iam currently using excel but i could also get it done in MATLAB.Please help!
Briefly, we computed the centroids (mean) ofthe 71-gene signature in B (58 B genes), c(B), andR (13 R genes), c(R), and for each tumor t we definedthe BRAFV600E-RAS score(BRS) of t as the difference between the distance of t from c(B)and c(R):
BRS(t) = |v(t)-c(B)|2 -|v(t)-c(R)|2
;
where v(t) is the vector of mRNA expression values of the 71genes in t, and the distance |x-y|2 is thenormalized Euclidean distance between the expression vectors.
Tumors with negative BRS (closer to B than to R) weredefined BRAFV600E-like, while tumors withpositive BRS (closer to R than to B) weredefined RAS-like.
BRAF
RAS
ABTB2
ANKRD46
AHR
CYB561
ANKLE2
GNA14
ANXA1
HGD
ANXA2P2
KATNAL2
ARNTL
KCNAB1
ASAP2
KCNIP3
BID
LGI3
CDC42EP1
MLEC
COL8A2
NQO1
CREB5
SFTPC
CTSC
SLC4A4
CYP1B1
SORBS2
DCSTAMP
DTX4
DUSP5
ETHE1
EVA1A
FAM20C
FCHO1
FLJ23867
FN1
FSTL3
GABRB2
GBP2
ITGA3
ITGB8
KCNN4
LAMB3
LLGL1
LY6E
MDFIC
MET
PDE5A
PDLIM4
PLCD3
PLEKHA6
PNPLA5
PPL
PRICKLE1
PROS1
PTPRE
PVRL4
RASGEF1B
RUNX1
RUNX2
SDC4
SEL1L3
SFTPB
SLC35F2
SOX4
SPOCK2
STK17B
SYT12
TACSTD2
TBC1D2
TGFBR1
TMEM43
Join a community of subject matter experts. Register for FREE to view solutions, replies, and use search function. Request answer by replying!
Post Reply