Using the file "sample.fastq" below and only linux command line tools: See sample.fastq content below: @SRR396637.sra.1
Posted: Fri Jul 15, 2022 5:19 pm
Using the file "sample.fastq" below and only linux commandline tools:
See sample.fastq content below:
@SRR396637.sra.1 HWI-EAS137R_0379:3:1:8738:1094 length=100CGGGCTGGTAGCTGTAGTACAGCGGCTTGATGCCGAACTCGTCGCGCAGCAGGGGCAATTGCCGGGTCTGCGGGCCCCCGCTGGCGAGGGCTTACCTGCC+SRR396637.sra.1 HWI-EAS137R_0379:3:1:8738:1094 length=100EGDEDGGBGB3F=B>CE;CE?AFFAC<ACA<?EBE:-::=B=37>08)57-<6;)=-7)76>=9;<'>1?<8)1%@?A3@A6B=@A##############@SRR396637.sra.2 HWI-EAS137R_0379:3:1:4414:1102 length=100TCAATATGCTTGAGGTCCGACGGCGACATGTCGAACTGCCAACAATCGTTGCTGTGCTCAGCCTGGAACCGAGCTGCGCCTGGCTCCCGGGACAGTTGAG+SRR396637.sra.2 HWI-EAS137R_0379:3:1:4414:1102 length=100GGDGE<GDGBGG8GGBGGDBGGGBG3DC<GAGF<AB?DBDA>3+CA?FECGGGG>DEA=2FBE3EGD->GB8D+3+87:)AECC3B<AFB?+>*B87?2:@SRR396637.sra.3 HWI-EAS137R_0379:3:1:6247:1095 length=100CGAATGCGTGGCGGAGCGCACCCGAGGCGCCAGCCATCGACCATCCCGAACGTGCCGATAGAGCGAACTCCGAGCGAGGGCCCCCGCTTCGGCCATAGCT+SRR396637.sra.3 HWI-EAS137R_0379:3:1:6247:1095 length=100GGG@DGGGBGGGGDDDGGGBIIBHFGED@GE8AFE?;EA?CC@1EAAA=8DBBDDGD>?@?79B>9+=8=AA=BB?########################@SRR396637.sra.4 HWI-EAS137R_0379:3:1:9438:1099 length=100GCCTGCTTGGCGACCAGGGACTTCAGATCGGCAGTCGCCTGAGGGGCCGGGTCGTCTGCGCACTGGCGGCGCAGGTCCTCGGCCCCGGCCGGCAGGGGGC+SRR396637.sra.4 HWI-EAS137R_0379:3:1:9438:1099 length=100GGDBGB@-FEEF<CE3?BD:>99:5?80AB-6<?1AE28?F=*AE;=9,?+9<</8<<<=20?0=BBB@BAA4B##########################@SRR396637.sra.5 HWI-EAS137R_0379:3:1
1096 length=100GGGCTTCCAGCAGGTTGATCCCGACCAGCAGCCAGAACAGGCCGATCATCACCACGGCGAAGCTGACGTAGTGGTCGAACAGGACGCTGACCAGCGCCGC+SRR396637.sra.5 HWI-EAS137R_0379:3:11096 length=100I??IIGGIIIIHIHIIIIGIIIHIII>II8GGGGGC+E2E@CCB:BGD<D8GB<DD>@ED-?@<E<2>)-=;??<C?C8A=?--A?B9?4=+(<<<@[email protected] HWI-EAS137R_0379:3:1
1098 length=100GCGCGGCGAAACCTAGCGCAGGCCGCGCTTGGCTTGGTCCCGCTCGCGGAGAGCGTTGCACACCCGGGGCGGGGGCCAGGGACGGGCGGGGAGCCGGCAC+SRR396637.sra.6 HWI-EAS137R_0379:3:11098 length=100DFB<8FF:A-7?B6BGGFD<<D8ADEC??-B#####################################################################
See sample.fastq content below:
@SRR396637.sra.1 HWI-EAS137R_0379:3:1:8738:1094 length=100CGGGCTGGTAGCTGTAGTACAGCGGCTTGATGCCGAACTCGTCGCGCAGCAGGGGCAATTGCCGGGTCTGCGGGCCCCCGCTGGCGAGGGCTTACCTGCC+SRR396637.sra.1 HWI-EAS137R_0379:3:1:8738:1094 length=100EGDEDGGBGB3F=B>CE;CE?AFFAC<ACA<?EBE:-::=B=37>08)57-<6;)=-7)76>=9;<'>1?<8)1%@?A3@A6B=@A##############@SRR396637.sra.2 HWI-EAS137R_0379:3:1:4414:1102 length=100TCAATATGCTTGAGGTCCGACGGCGACATGTCGAACTGCCAACAATCGTTGCTGTGCTCAGCCTGGAACCGAGCTGCGCCTGGCTCCCGGGACAGTTGAG+SRR396637.sra.2 HWI-EAS137R_0379:3:1:4414:1102 length=100GGDGE<GDGBGG8GGBGGDBGGGBG3DC<GAGF<AB?DBDA>3+CA?FECGGGG>DEA=2FBE3EGD->GB8D+3+87:)AECC3B<AFB?+>*B87?2:@SRR396637.sra.3 HWI-EAS137R_0379:3:1:6247:1095 length=100CGAATGCGTGGCGGAGCGCACCCGAGGCGCCAGCCATCGACCATCCCGAACGTGCCGATAGAGCGAACTCCGAGCGAGGGCCCCCGCTTCGGCCATAGCT+SRR396637.sra.3 HWI-EAS137R_0379:3:1:6247:1095 length=100GGG@DGGGBGGGGDDDGGGBIIBHFGED@GE8AFE?;EA?CC@1EAAA=8DBBDDGD>?@?79B>9+=8=AA=BB?########################@SRR396637.sra.4 HWI-EAS137R_0379:3:1:9438:1099 length=100GCCTGCTTGGCGACCAGGGACTTCAGATCGGCAGTCGCCTGAGGGGCCGGGTCGTCTGCGCACTGGCGGCGCAGGTCCTCGGCCCCGGCCGGCAGGGGGC+SRR396637.sra.4 HWI-EAS137R_0379:3:1:9438:1099 length=100GGDBGB@-FEEF<CE3?BD:>99:5?80AB-6<?1AE28?F=*AE;=9,?+9<</8<<<=20?0=BBB@BAA4B##########################@SRR396637.sra.5 HWI-EAS137R_0379:3:1
1096 length=100GGGCTTCCAGCAGGTTGATCCCGACCAGCAGCCAGAACAGGCCGATCATCACCACGGCGAAGCTGACGTAGTGGTCGAACAGGACGCTGACCAGCGCCGC+SRR396637.sra.5 HWI-EAS137R_0379:3:11096 length=100I??IIGGIIIIHIHIIIIGIIIHIII>II8GGGGGC+E2E@CCB:BGD<D8GB<DD>@ED-?@<E<2>)-=;??<C?C8A=?--A?B9?4=+(<<<@[email protected] HWI-EAS137R_0379:3:1
1098 length=100GCGCGGCGAAACCTAGCGCAGGCCGCGCTTGGCTTGGTCCCGCTCGCGGAGAGCGTTGCACACCCGGGGCGGGGGCCAGGGACGGGCGGGGAGCCGGCAC+SRR396637.sra.6 HWI-EAS137R_0379:3:11098 length=100DFB<8FF:A-7?B6BGGFD<<D8ADEC??-B#####################################################################